2. How to obtain differentially expressed genes?

Go to gene expression page of Mammonc-DB and consider left panel for analysis.

3. How to query for specific gene in a particular RNA-seq dataset?

Step 3: Go to gene expression page of Mammonc-DB and consider right panel for analysis.

Example

3a: How to explore expression profile of gene of interest based on clinico-pathologic factors?

Example of SEMA3B expression based on different clincial features in TCGA.

3b: How to obtain Kaplan meier plot from Mammonc-DB?

Example of XRCC4 survival analysis based on different clincial features available in TCGA.

4. How to query for specific gene in a particular scRNA-seq dataset?

Step 4: Go to gene expression page of Mammonc-DB and consider scRNA-seq button on top for analysis.

5. How to query for specific gene in a particular ChIP-seq dataset?

Step 5: Go to gene regulation page of Mammonc-DB and consider the panel for analysis.

Example of ER binding sites for RET in MCF7 breast cancer cell line.

6. How to query for specific protein in CPTAC dataset?

Step 6: Go to protein expression page of Mammonc-DB and consider the panel for analysis.

Example of TK1 expression and classifications associated.